CLIP: construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo
UV cross-linking and immunoprecipitation assay (CLIP) can identify direct interaction sites
between RNA-binding proteins and RNAs in vivo, and has been used to study several
proteins in tissues and cell cultures. The main challenge of the method is to specifically
amplify the low amount of isolated RNA. The current protocol is optimised for efficient RNA
purification and ligation of barcoded RNA adapters. High-throughput sequencing of the
multiplexed cDNA library allows for a comprehensive coverage of the target sequences.
between RNA-binding proteins and RNAs in vivo, and has been used to study several
proteins in tissues and cell cultures. The main challenge of the method is to specifically
amplify the low amount of isolated RNA. The current protocol is optimised for efficient RNA
purification and ligation of barcoded RNA adapters. High-throughput sequencing of the
multiplexed cDNA library allows for a comprehensive coverage of the target sequences.
UV cross-linking and immunoprecipitation assay (CLIP) can identify direct interaction sites between RNA-binding proteins and RNAs in vivo, and has been used to study several proteins in tissues and cell cultures. The main challenge of the method is to specifically amplify the low amount of isolated RNA. The current protocol is optimised for efficient RNA purification and ligation of barcoded RNA adapters. High-throughput sequencing of the multiplexed cDNA library allows for a comprehensive coverage of the target sequences.
Elsevier