Biomimetic artificial epigenetic code for targeted acetylation of histones

J Taniguchi, Y Feng, GN Pandian… - Journal of the …, 2018 - ACS Publications
J Taniguchi, Y Feng, GN Pandian, F Hashiya, T Hidaka, K Hashiya, S Park, T Bando, S Ito…
Journal of the American Chemical Society, 2018ACS Publications
While the central role of locus-specific acetylation of histone proteins in eukaryotic gene
expression is well established, the availability of designer tools to regulate acetylation at
particular nucleosome sites remains limited. Here, we develop a unique strategy to
introduce acetylation by constructing a bifunctional molecule designated Bi-PIP. Bi-PIP has
a P300/CBP-selective bromodomain inhibitor (Bi) as a P300/CBP recruiter and a pyrrole–
imidazole polyamide (PIP) as a sequence-selective DNA binder. Biochemical assays …
While the central role of locus-specific acetylation of histone proteins in eukaryotic gene expression is well established, the availability of designer tools to regulate acetylation at particular nucleosome sites remains limited. Here, we develop a unique strategy to introduce acetylation by constructing a bifunctional molecule designated Bi-PIP. Bi-PIP has a P300/CBP-selective bromodomain inhibitor (Bi) as a P300/CBP recruiter and a pyrrole–imidazole polyamide (PIP) as a sequence-selective DNA binder. Biochemical assays verified that Bi-PIPs recruit P300 to the nucleosomes having their target DNA sequences and extensively accelerate acetylation. Bi-PIPs also activated transcription of genes that have corresponding cognate DNA sequences inside living cells. Our results demonstrate that Bi-PIPs could act as a synthetic programmable histone code of acetylation, which emulates the bromodomain-mediated natural propagation system of histone acetylation to activate gene expression in a sequence-selective manner.
ACS Publications